Yongsoo Park Lab

NeuroBiology

Modeling neurological disorders using reconstitution and stem cell-based approach

RESEARCH

<p>Vesicles that contain neurotransmitters in neurons are nanomachines (synaptic vesicles, 45 nm in diameter) to deliver neurotransmitters to the extracellular target via a membrane fusion process.</p>
<p>Our research focuses on the molecular mechanisms underlying neurodevelopmental disorders including autism spectrum disorder (ASD) with a focus on vesicle fusion and calcium signaling. By integrating interdisciplinary methods that include biochemical, biophysical, and stem cell-based approaches, we aim to identify therapeutics that target neuroinflammation, vesicle fusion, and calcium signaling.</p>
<p>1. Modeling neurodevelopmental disorders and ASD using iPSC-derived neurons and brain organoids.</p>
<p>2. Extracellular vesicle (EV) biomarkers for ASD.</p>
<p>3. Lipid dysregulation in neurological diseases.</p>
<p>4. New paradigm of RIBOMONE in physiology and pathology.</p>

Vesicles that contain neurotransmitters in neurons are nanomachines (synaptic vesicles, 45 nm in diameter) to deliver neurotransmitters to the extracellular target via a membrane fusion process.

Our research focuses on the molecular mechanisms underlying neurodevelopmental disorders including autism spectrum disorder (ASD) with a focus on vesicle fusion and calcium signaling. By integrating interdisciplinary methods that include biochemical, biophysical, and stem cell-based approaches, we aim to identify therapeutics that target neuroinflammation, vesicle fusion, and calcium signaling.

1. Modeling neurodevelopmental disorders and ASD using iPSC-derived neurons and brain organoids.

2. Extracellular vesicle (EV) biomarkers for ASD.

3. Lipid dysregulation in neurological diseases.

4. New paradigm of RIBOMONE in physiology and pathology.

<p><strong>Modeling neurodevelopmental disorders using iPSC-derived neurons and brain organoids.</strong></p>
<p>We aim to study the pathophysiological mechanisms underlying ASD phenotype using patient‐specific human induced pluripotent stem cell (hiPSC)‐derived cortical neurons and brain organoids with focus on calcium signaling and synaptic transmission. Human iPSC-derived neurons recapitulate the genomic, molecular and cellular attributes of native human neuronal subtypes with advantages over single time point studies.</p>
<p>Autism spectrum disorder (ASD) is a complex neurodevelopmental condition characterized by social communication deficits and frequent comorbidities such as epilepsy. Genetic studies indicate that ASD-associated risk variants converge on calcium signaling pathways and vesicle fusion.</p>
<p>Using human iPSC-derived cortical neurons and 3D cortical organoids, as well as zebrafish models, we study store-operated Ca²⁺ entry (SOCE) in neuronal hyperactivity. We employ functional assays such as single-cell calcium imaging, whole-cell patch-clamp electrophysiology, and microelectrode array (MEA) recordings to characterize pathophysiological changes.</p>

Modeling neurodevelopmental disorders using iPSC-derived neurons and brain organoids.

We aim to study the pathophysiological mechanisms underlying ASD phenotype using patient‐specific human induced pluripotent stem cell (hiPSC)‐derived cortical neurons and brain organoids with focus on calcium signaling and synaptic transmission. Human iPSC-derived neurons recapitulate the genomic, molecular and cellular attributes of native human neuronal subtypes with advantages over single time point studies.

Autism spectrum disorder (ASD) is a complex neurodevelopmental condition characterized by social communication deficits and frequent comorbidities such as epilepsy. Genetic studies indicate that ASD-associated risk variants converge on calcium signaling pathways and vesicle fusion.

Using human iPSC-derived cortical neurons and 3D cortical organoids, as well as zebrafish models, we study store-operated Ca²⁺ entry (SOCE) in neuronal hyperactivity. We employ functional assays such as single-cell calcium imaging, whole-cell patch-clamp electrophysiology, and microelectrode array (MEA) recordings to characterize pathophysiological changes.

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Extracellular vesicle (EV) biomarkers and EV-mediated inflammation in neurological disorders.

Exosomes and EVs can be good for biomarker discovery for different types of diseases. Exosomes are small vesicles (40–100 nm in diameter) and are thought to be the carriers of signaling macromolecules and RNAs for cell-to-cell communication. The goal of this project is to identify and validate a list of EV biomarkers for early diagnosis of ASD.

These markers could facilitate the development of clinical targets for early intervention to prevent, delay or reduce the severity of ASD.

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Lipid dysregulation in neurological diseases.

Lipid metabolism plays a crucial role in maintaining neuronal function, and alterations in lipid composition, including the reduction of phosphatidylinositol 4,5-bisphosphate (PIP2), have been implicated in neurodegenerative disorders. PIP2 is a key regulator of cell signaling and membrane trafficking, and its dysregulation is associated with neuronal dysfunction. Our research was the first to demonstrate that PIP2 functions as an electrostatic catalyst for vesicle fusion by lowering the hydration energy barrier (ACS Nano, 2024; Science Advances, 2025). We propose a paradigm shift in which PIP2 is recognized as a lipid catalyst for vesicle fusion, expanding our understanding of the molecular mechanisms governing neurotransmitter release.

Additionally, our findings indicate that cholesterol is essential for Ca²⁺-dependent vesicle fusion by enhancing membrane bending and deformation (Advanced Science, 2023).

Our research aims to identify potential therapeutic interventions by targeting lipid dysregulation and modulating protein-lipid interactions.

RIBOMONE in physiology and pathology.

My group first reported the active exocytosis of miRNAs independently of exosomes in response to neuronal stimulation.

We propose a new function of non-coding RNAs named (‘ribomone’ = ribonucleotide + hormone), and suggest that miRNAs may function as hormones; i.e., miRNA is stored in vesicles and released by vesicle fusion in response to stimulation, thereby contributing to cell-to-cell communication.

We study the role of ribomone in physiology and pathology.

Team

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Yongsoo Park, Ph.D.

Senior Scientist / Associate Professor

Member, EMBO Young Investigator Programme (YIP) as an EMBO Installation Grantee, 2016-2019.

LinkedIn / ResearchGate Google Scholar


 

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Kyung Chul Shin, Ph.D.

Postdoctoral Fellow


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Dr. Gowher Ali

Postdoctoral Fellow


 

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Houda Yasmine Ali Moussa

Research Associate


 

Rawan Hussam Albatarni

Graduate Student


 

Alumni

Dr. Yelda Birinci, Post-doc

Alican Gümürdü, Graduate Student

Obadah Al Bahra, Graduate Student

Ramazan Yildiz, Graduate Student

Selected Publications

#, Corresponding author

Full lists in PubMed.

  1. Ali Moussa HY, Shin KC, Park Y#. Ca2+/calmodulin and protein kinase C (PKC) reverse the vesicle fusion arrest by unmasking PIP2. Science Advances. 2025 Feb 28;11(9):eadr9859.
  2. Park Y#. Fluorescence anisotropy for monitoring cis- and trans-membrane interactions of synaptotagmin-1. Methods Mol Biol. 2025;2887:175-182.
  3. Ali Moussa HY, Shin KC, de la Fuente A, Bensmail I, Abdesselem HB, Ponraj J, Mansour S, Al-Shaban FA, Stanton LW, Abdulla SA and Park Y#. Proteomics analysis of extracellular vesicles for biomarkers of autism spectrum disorder. Front. Mol. Biosci. 2024;11:1467398.
  4. Shin KC, Ali Moussa HY, Park Y#. Cholesterol imbalance and neurotransmission defects in neurodegeneration. Exp Mol Med. 2024 Aug 1. Review.
  5. Ali Moussa HY, Shin KC, Ponraj J, Park SH, Lee OS, Mansour S, Park Y#. PIP2 Is an electrostatic Catalyst for Vesicle Fusion by Lowering the Hydration Energy: Arresting Vesicle Fusion by Masking PIP2. ACS Nano. 2024, 18, 20, 12737-12748. Highlighted as a supplementary Cover.
  6. Shin KC, Ali G, Ali Moussa HY, Gupta V, de la Fuente A, Kim HG, Stanton LW, Park Y#. Deletion of TRPC6, an autism risk gene, induces hyperexcitability in cortical neurons derived from human pluripotent stem cells. Mol Neurobiol. 2023 Aug 8.
  7. Ali Moussa HY, Shin KC, Ponraj J, Kim SJ, Ryu JK, Mansour S, Park Y#. Requirement of cholesterol for calcium-dependent vesicle fusion by strengthening synaptotagmin-1-induced membrane bending. Adv Sci. 2023 May;10(15):e2206823. Highlighted as a Frontispiece.
  8. Ali Moussa HY, Park Y#. Electrostatic regulation of the cis- and trans-membrane interactions of synaptotagmin-1. Sci Rep. 2022 Dec 27;12(1):22407.
  9. Ali Moussa HY, Manaph N, Ali G, Maacha S, Shin KC, Ltaief SM, Gupta V, Tong Y, Ponraj J, Salloum-Asfar S, Mansour S, Al-Shaban FA, Kim HG, Stanton LW, Grivel JC, Abdulla SA, Al-Shammari AR#, Park Y#. Single extracellular vesicle analysis using flow cytometry for neurological disorder biomarkers. Front Integr Neurosci. 2022 May 17;16:879832.
  10. Birinci Y, Preobraschenski J, Ganzella M, Jahn R, Park Y#. Isolation of large dense-core vesicles from bovine adrenal medulla for functional studies. Sci Rep. 2020 May 5;10(1):7540.
  11. Park Y# and Ryu JK#. Models of synaptotagmin-1 to trigger Ca2+-dependent vesicle fusion. FEBS Lett. 2018 Nov;592(21):3480-3492.
  12. Park Y#, MicroRNA exocytosis by vesicle fusion in neuroendocrine cells. Front Endocrinol. 2017 Dec 22;8:355.
  13. Gümürdü A, Yildiz R, Eren E, Karakülah G, Ünver T, GENÇ Ş, and Park Y#. MicroRNA exocytosis by large dense-core vesicle fusion. Sci Rep. 2017 Mar 30;7:45661.
  14. Park Y, Seo JB, Fraind A, Pérez-Lara A, Yavuz H, Han K, Jung SR, Kattan I, Walla PJ, Choi MY, Cafiso DS, Koh DS, Jahn R. Synaptotagmin-1 binds to PIP2-containing membrane but not to SNAREs at physiological ionic strength. Nature Struct Mol Biol. 2015 Oct;22(10):815-823.
  15. Park Y, Vennekate W, Yavuz H, Preobraschenski J, Hernandez JM, Riedel D, Walla PJ, Jahn R. α-SNAP interferes with the zippering of the SNARE membrane fusion machinery. J Biol Chem. 2014 Jun 6;289(23):16326-16335.
  16. Park Y, Hernandez J. M, van den Bogaart G, Ahmed S, Holt M, Riedel D, and Jahn R. Controlling synaptotagmin activity by electrostatic screening. Nature Struct Mol Biol. 2012 Oct;19(10):991-997.
  17. Park Y and Kim KT. Dominant role of lipid rafts L-type calcium channel in activity-dependent potentiation of large dense-core vesicle exocytosis. J Neurochem. 2009 Jul;110(2):520-529.
  18. Park Y and Kim KT. Short-term plasticity of small synaptic vesicle (SSV) and large dense-core vesicle (LDCV) exocytosis. Cell Signal. 2009 Oct;21(10):1465-70.
  19. Park YS, Choi YH, Park CH, Kim KT. Non-genomic glucocorticoid effects on activity-dependent potentiation of catecholamine release in chromaffin cells. Endocrinology. 2008 Oct;149(10):4921-7.
  20. Park YS, Hur EM, Choi BH, Kwak E, Jun DJ, Park SJ, Kim KT. Involvement of protein kinase C-epsilon in activity-dependent potentiation of large dense-core vesicle exocytosis in chromaffin cells. J Neurosci. 2006 Aug 30;26(35): 8999-9005.
  21. (Cover article) Park YS, Jun DJ, Hur EM, Lee SK, Suh BS, Kim KT. Activity-dependent potentiation of large dense-core vesicle release modulated by mitogen-activated protein kinase(MAPK)/ERK signaling. Endocrinology. 2006 Mar;147(3):1349-56.

Latest News

  • Our research article was accepted from Science Advances (Feb. 2025).
  • Our method paper was published in Methods Mol Biol (Jan. 2025).
  • Our research article about extracellular vesicles for biomarkers of autism was published in Frontiers.
  • Our cholesterol review article is highlighted in Medical News Today, which is the UK-based medical news platform (Aug. 2024).
  • Our review article was published in Exp Mol Med (Aug. 2024).
  • Yongsoo was invited as a seminar speaker in the Interdisciplinary Program in Brain Science, Seoul National University (30 May. 2024).
  • ACS Nano article was selected as a supplementary Cover (May. 2024).
  • Our review article accepted from Experimental and Molecular Medicine (April. 2024)!!
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Latest News

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Address

Qatar Biomedical Research Institute (QBRI),
College of Health & Life Sciences (CHLS),
Hamad Bin Khalifa University (HBKU),
Education City, Doha, Qatar

PHONE & E-MAIL

Email: ypark@hbku.edu.qa